Episode 39: Spatial proteomics at Pixelgen

Tune in to hear all about Pixelgen Technologies - creators of a novel technology for doing single-cell spatial proteomics.


We chat about how this fascinating technology works, what you can do with the data and why they chose to develop their analysis suite as an open-source nf-core pipeline.


Links:


Chapters:

  • Start (00:00)
  • Welcome (00:09)
  • Introductions (00:50)
  • Intro to Pixelgen Technologies (01:41)
  • Lab methods (03:08)
  • Nature Methods publication (06:15)
  • Data visualisation (09:35)
  • Working with single cell data (12:29)
  • Cell interactions (15:06)
  • Why Pixelgen chose open source (16:05)
  • Pixelator Python package (20:10)
  • Building within nf-core (21:40)
  • Florian - Biolizard (23:01)
  • Pipeline overview (25:19)
  • Using nf-core from a commercial setting (26:50)
  • Coming out of stealth (28:53)
  • Extending Pixelator (32:24)
  • Dealing with customers (34:58)
  • Looking to the future (39:38)
  • Interactive analysis (41:32)
  • Advice for others (43:12)
  • Pixelgen at the Nextflow Summit (45:16)

Om Podcasten

Nextflow is the leading workflow orchestrator for bioinformaticians, data scientists, and professionals in computational biology and genetics. Stay informed with the latest updates, expert interviews, and insights from the Nextflow ecosystem with The Nextflow Podcast, by Seqera. Follow us on Twitter @nextflowio and YouTube @Nextflow.